Merge branch 'master' of https://gitlab.phys.ethz.ch/hpcse_fs15/lecture

exercises/ex04/skeleton/diffusion2d_serial.cpp

+#include <iostream>
+#include <algorithm>
+#include <functional>
+#include <iterator>
+#include <array>
+#include <string>
+#include <fstream>
+#include <sstream>
+#include <cassert>
+#include <vector>
+#include <chrono>
+#include <cmath>
+
+typedef double value_type;
+typedef std::size_t size_type;
+
+class Diffusion2D
+{
+    
+public:
+    
+    Diffusion2D(
+                const value_type D,
+                const value_type rmax,
+                const value_type rmin,
+                const size_type N
+                )
+    : D_(D)
+    , rmax_(rmax)
+    , rmin_(rmin)
+    , N_(N)
+    {
+        N_tot = N_*N_;
+        
+        /// real space grid spacing
+        dr_ = (rmax_ - rmin_) / (N_ - 1);
+        
+        /// dt < dx*dx / (4*D) for stability
+        dt_ = dr_ * dr_ / (6 * D_);
+        
+        /// stencil factor
+        fac_ = dt_ * D_ / (dr_ * dr_);
+        
+        rho_ = new value_type[N_tot];
+        rho_tmp = new value_type[N_tot];
+        
+        std::fill(rho_, rho_+N_tot,0.0);
+        std::fill(rho_tmp, rho_tmp+N_tot,0.0);
+        
+        InitializeSystem();
+    }
+    
+    ~Diffusion2D()
+    {
+        delete[] rho_;
+        delete[] rho_tmp;
+    }
+    
+    void PropagateDensity();
+    
+    value_type GetSize() {
+        value_type sum = 0;
+        
+        for(size_type i = 0; i < N_tot; ++i)
+            sum += rho_[i];
+        
+        return dr_*dr_*sum;
+    }
+    
+    value_type GetMoment() {
+        value_type sum = 0;
+        
+        for(size_type i = 0; i < N_; ++i)
+            for(size_type j = 0; j < N_; ++j) {
+                value_type x = j*dr_ + rmin_;
+                value_type y = i*dr_ + rmin_;
+                sum += rho_[i*N_ + j] * (x*x + y*y);
+            }
+        
+        return dr_*dr_*sum;
+    }
+    
+    value_type GetTime() const {return time_;}
+    
+    void WriteDensity(const std::string file_name) const;
+    
+private:
+    
+    void InitializeSystem();
+    
+    const value_type D_, rmax_, rmin_;
+    const size_type N_;
+    size_type N_tot;
+    
+    value_type dr_, dt_, fac_;
+    
+    value_type time_;
+    
+    value_type *rho_, *rho_tmp;
+};
+
+void Diffusion2D::WriteDensity(const std::string file_name) const
+{
+    std::ofstream out_file;
+    out_file.open(file_name, std::ios::out);
+    assert(out_file.is_open());
+    
+    for(size_type i = 0; i < N_; ++i){
+        
+        for(size_type j = 0; j < N_; ++j)
+            out_file << (i*dr_+rmin_) << '\t' << (j*dr_+rmin_) << '\t' << rho_[i*N_ + j] << "\n";
+        
+        out_file << "\n";
+        
+    }
+    
+    out_file.close();
+}
+
+void Diffusion2D::PropagateDensity()
+{
+    using std::swap;
+    /// Dirichlet boundaries; central differences in space, forward Euler
+    /// in time
+    
+    for(size_type i = 0; i < N_; ++i)
+        for(size_type j = 0; j < N_; ++j)
+            rho_tmp[i*N_ + j] =
+            rho_[i*N_ + j]
+            +
+            fac_
+            *
+            (
+             (j == N_-1 ? 0 : rho_[i*N_ + (j+1)])
+             +
+             (j == 0 ? 0 : rho_[i*N_ + (j-1)])
+             +
+             (i == N_-1 ? 0 : rho_[(i+1)*N_ + j])
+             +
+             (i == 0 ? 0 : rho_[(i-1)*N_ + j])
+             -
+             4*rho_[i*N_ + j]
+             );
+    
+    swap(rho_tmp,rho_);
+    
+    time_ += dt_;
+}
+
+void Diffusion2D::InitializeSystem()
+{
+    time_ = 0;
+    
+    /// initialize rho(x,y,t=0)
+    value_type bound = 1./2;
+    
+    for(size_type i = 0; i < N_; ++i)
+        for(size_type j = 0; j < N_; ++j){
+            if(std::fabs(i*dr_+rmin_) < bound && std::fabs(j*dr_+rmin_) < bound){
+                rho_[i*N_ + j] = 1;
+            }
+            else{
+                rho_[i*N_ + j] = 0;
+            }
+            
+        }
+}
+
+int main(int argc, char* argv[])
+{
+    assert(argc == 2);
+    
+    const value_type D = 1;
+    const value_type tmax = 0.001;
+    const value_type rmax = 1;
+    const value_type rmin = -1;
+    
+    const size_type N_ = 1<<std::stoul(argv[1]);
+    
+    Diffusion2D System(D, rmax, rmin, N_);
+    
+    value_type time = 0;
+    
+    std::chrono::time_point<std::chrono::high_resolution_clock> start, end;
+    start = std::chrono::high_resolution_clock::now();
+    
+    while(time < tmax){
+        System.PropagateDensity();
+        time = System.GetTime();
+        std::cout << time << '\t' << System.GetSize() << '\t' << System.GetMoment() << std::endl;
+    }
+    
+    end = std::chrono::high_resolution_clock::now();
+    
+    double elapsed = std::chrono::duration<double>(end-start).count();
+    
+    std::cout << N_ << '\t' << elapsed << std::endl;
+    
+    std::string density_file = "Density.dat";
+    System.WriteDensity(density_file);
+    
+    return 0;
+}