Various bug fixes

stitch_project/api/Stitch/Stitch.py

stitch_project/stitch/CommandDecoder.vhd

stitch_project/stitch/Multiplexer.vhd

stitch_project/stitch/RecordControl.vhd

stitch_project/stitch/SerialReceiver.vhd

stitch_project/stitch/SerialTransmitter.vhd

stitch_project/stitch/Stitch.bgn

stitch_project/stitch/Stitch.bin

stitch_project/stitch/Stitch.bit

stitch_project/stitch/Stitch.bld

stitch_project/stitch/Stitch.cmd_log

stitch_project/stitch/Stitch.drc

stitch_project/stitch/Stitch.ncd

stitch_project/stitch/Stitch.ngc

stitch_project/stitch/Stitch.ngd

stitch_project/stitch/Stitch.ngr

stitch_project/stitch/Stitch.pad

stitch_project/stitch/Stitch.par

stitch_project/stitch/Stitch.pcf

stitch_project/stitch/Stitch.ptwx