save values in shared memory

calibrate.py

@@ -21,8 +21,8 @@ def main():
         pos, _ = ion_positions(image)
         user_2 = input("Use (detected) dark ions for calibration? (y, [n])   ")
         if user_2 in ("y", "yes"):
-            read_factor(conn)
-            pos = dark_ions(image, pos)
+            dist_factor = read_factor(conn)
+            pos = dark_ions(image, pos, dist_factor)
         pos = pos[:, 1]
 
         if len(pos) > 1:

main.py

@@ -132,7 +132,7 @@ class Main:
                 self.roundness = -1
 
             if not ion_cloud:
-                self._processing(self.image, dist_factor)
+                self._processing(self.image.copy(), dist_factor)
 
             # Update running time
             self.running_time = time.time() - self.init_time
@@ -140,9 +140,10 @@ class Main:
                 self.init_time = time.time()
 
             # Save variables in self.memory
-            
+            self._save_in_memory()
             self.num += 1
             self.sem.release()
+            time.sleep(0.1)
 
     def _processing(self, image, dist_factor):
         self.coord, self.max_spot_size = ion_positions(image)

tools.py

@@ -403,8 +403,9 @@ def dark_ions(image, coord, dist_factor):
     coord = coord[coord[:, 1] < image.shape[1]]  # remove points outside the image
 
     if loss.min() > 20:
-        warnings.warn("Loss is too high... "
-        "Try calculating a new factor value using calibrate() function.")
+        # warnings.warn("Loss is too high... "
+        # "Try calculating a new factor value using calibrate() function.")
+        pass
 
     return coord