From 04cee2ca292d9ea49f8d96f5b0ada52c9acdc23a Mon Sep 17 00:00:00 2001
From: amitjans <amitjans@ethz.ch>
Date: Mon, 7 Jun 2021 19:53:50 +0200
Subject: [PATCH] Fix mistake
---
tools.py | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/tools.py b/tools.py
index 443b670..14ae2cb 100644
--- a/tools.py
+++ b/tools.py
@@ -113,16 +113,17 @@ class Main:
release_semaphore_write(sem, num_sem=10)
def _processing(self, image, dist_factor):
- coord, max_spot_size = ion_positions(image)
+ img = image.copy()
+ coord, max_spot_size = ion_positions(img)
if len(coord) > 0:
- roundness = ion_roundness(image, coord[0][:2])
- new_img = compensate_gradient(image, coord)
- max_int, num_pix = max_ion_intensity(new_img, coord)
- coord = detect_dim_ions(new_img, coord, max_int)
+ roundness = ion_roundness(img, coord[0][:2])
+ img = compensate_gradient(img, coord)
+ max_int, num_pix = max_ion_intensity(img, coord)
+ coord = detect_dim_ions(img, coord, max_int)
linearity = ion_linearity(coord)
if len(coord) > 1 and dist_factor is not None:
- coord = dark_ions(image, coord, dist_factor)
+ coord = dark_ions(img, coord, dist_factor)
_, old_idx = self.memory.get_value()
self.memory.save_value(coord)
--
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