diff --git a/tools.py b/tools.py index 443b670b75f0e4dcd877547df1ffb80c3c4964d0..14ae2cbcc4bb8911d9b5156c25ab2fdae6cd3a45 100644 --- a/tools.py +++ b/tools.py @@ -113,16 +113,17 @@ class Main: release_semaphore_write(sem, num_sem=10) def _processing(self, image, dist_factor): - coord, max_spot_size = ion_positions(image) + img = image.copy() + coord, max_spot_size = ion_positions(img) if len(coord) > 0: - roundness = ion_roundness(image, coord[0][:2]) - new_img = compensate_gradient(image, coord) - max_int, num_pix = max_ion_intensity(new_img, coord) - coord = detect_dim_ions(new_img, coord, max_int) + roundness = ion_roundness(img, coord[0][:2]) + img = compensate_gradient(img, coord) + max_int, num_pix = max_ion_intensity(img, coord) + coord = detect_dim_ions(img, coord, max_int) linearity = ion_linearity(coord) if len(coord) > 1 and dist_factor is not None: - coord = dark_ions(image, coord, dist_factor) + coord = dark_ions(img, coord, dist_factor) _, old_idx = self.memory.get_value() self.memory.save_value(coord)